EMBOSS explorer

polydot

Displays all-against-all dotplots of a set of sequences (read the manual)

Unshaded fields are optional and can safely be ignored. (hide optional fields)

Input section

Select an input sequence. Use one of the following three fields:

  1. To access a sequence from a database, enter the USA here:
  2. To upload a sequence from your local computer, select it here:
  3. To enter the sequence data manually, type here:
Required section
Word size
Output section
Gap (in residues) between dotplots
Draw a box around each dotplot?
Dump all matches as feature files?
Output feature format
Separate files for each entry?
Output graphic format
Graphic title
Graphic subtitle
X axis title
Y axis title
Run section
Email address: If you are submitting a long job and would like to be informed by email when it finishes, enter your email address here.